pysammos
Installation
Pysammos Documentation
Tutorials and Examples
Benchmarks
License
pysammos
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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P
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R
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S
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T
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U
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V
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W
A
add_phases() (pysammos.data_write.h5.writer.H5XarrayManager method)
add_positions() (pysammos.data_write.h5.writer.H5XarrayManager method)
area() (in module pysammos.macroscopic_fields.sliced.utils)
Automatic_Range() (pysammos.grid_generation.regular_cuboid.Grid_Generation method)
B
bulk_fabric_tensor_Sun2015() (in module pysammos.macroscopic_fields.gridded.secondary)
C
c2f_reshape() (in module pysammos.data_write.vtkhdf.core)
calc_cutoff() (in module pysammos.spatial_weights.resolution)
calc_displacement() (in module pysammos.neighbour_search.grid_particle_search)
calc_half_width() (in module pysammos.spatial_weights.resolution)
calc_slices() (in module pysammos.macroscopic_fields.sliced.granular_temperature)
CoarseGraining (class in pysammos.coarse_graining)
compute_deviatoric_tensor() (in module pysammos.macroscopic_fields.gridded.secondary)
compute_dist_along_branch() (in module pysammos.spatial_weights.utils)
compute_granular_temperature() (in module pysammos.macroscopic_fields.gridded.secondary)
compute_inertial_number() (in module pysammos.macroscopic_fields.gridded.secondary)
compute_pressure() (in module pysammos.macroscopic_fields.gridded.secondary)
compute_second_invariant() (in module pysammos.macroscopic_fields.gridded.secondary)
compute_shear_rate_tensor() (in module pysammos.macroscopic_fields.gridded.secondary)
compute_vector_bulk_gradient() (in module pysammos.macroscopic_fields.gridded.secondary)
compute_velgrad_leastsquares() (in module pysammos.macroscopic_fields.gridded.secondary)
ContactData__JP() (in module pysammos.data_read.mfix.point_data)
contacts() (in module pysammos.data_read.mfix.cell_data)
(in module pysammos.data_read.mfix.point_data)
count() (in module pysammos.data_handle.contacts.complete.coordination_number)
create_adaptive_chunks() (in module pysammos.data_write.vtkhdf.core)
create_cell_dataset() (in module pysammos.data_write.vtkhdf.core)
create_field_dataset() (in module pysammos.data_write.vtkhdf.core)
Create_grid_points() (pysammos.grid_generation.regular_cuboid.Grid_Generation static method)
create_point_dataset() (in module pysammos.data_write.vtkhdf.core)
D
d50_calc() (in module pysammos.data_handle.particles.particle_stats)
data_sampling() (pysammos.coarse_graining.CoarseGraining method)
delete() (in module pysammos.data_handle.contacts.qualitycheck.duplicates)
dimensions2extent() (in module pysammos.data_write.vtkhdf.core)
E
extent2dimensions() (in module pysammos.data_write.vtkhdf.core)
extract_all_polydata() (in module pysammos.data_read.mfix.point_data)
F
f2c_reshape() (in module pysammos.data_write.vtkhdf.core)
fields_in_time() (pysammos.coarse_graining.CoarseGraining method)
find_phases() (in module pysammos.particle_phase.clustering)
first_significant_figure_position() (in module pysammos.spatial_weights.utils)
from_contacts() (in module pysammos.data_handle.contacts.complete.branch_vectors)
from_diameters() (in module pysammos.data_handle.contacts.complete.branch_vectors)
G
gaussian() (in module pysammos.spatial_weights.kernels)
Generate() (pysammos.grid_generation.regular_cuboid.Grid_Generation method)
generate_grid() (pysammos.coarse_graining.CoarseGraining method)
get_area_factor() (pysammos.post_averaging.profiles.VerticalIntegrator method)
get_bounds() (in module pysammos.data_read.mfix.utils)
get_cell_array() (in module pysammos.data_write.vtkhdf.core)
get_cell_data_shape() (in module pysammos.data_write.vtkhdf.core)
get_cell_dataset() (in module pysammos.data_write.vtkhdf.core)
get_data_order() (in module pysammos.data_write.vtkhdf.core)
get_field_array() (in module pysammos.data_write.vtkhdf.core)
get_field_dataset() (in module pysammos.data_write.vtkhdf.core)
get_fields_to_compute() (in module pysammos.macroscopic_fields.field_dependencies)
get_file_type() (in module pysammos.data_read.mfix.file_read)
get_particle_phases() (pysammos.coarse_graining.CoarseGraining method)
get_particle_size_statistics() (pysammos.coarse_graining.CoarseGraining method)
get_point_array() (in module pysammos.data_write.vtkhdf.core)
get_point_data_shape() (in module pysammos.data_write.vtkhdf.core)
get_point_data_variable() (in module pysammos.data_read.mfix.utils)
get_point_dataset() (in module pysammos.data_write.vtkhdf.core)
get_point_tensor() (in module pysammos.data_write.vtkhdf.core)
get_point_vector() (in module pysammos.data_write.vtkhdf.core)
get_position_data() (pysammos.post_averaging.profiles.VerticalIntegrator method)
get_unique_pairs() (in module pysammos.data_handle.contacts.qualitycheck.duplicates)
granular_temperature() (in module pysammos.macroscopic_fields.sliced.granular_temperature)
Grid_Generation (class in pysammos.grid_generation.regular_cuboid)
H
h() (in module pysammos.spatial_weights.kernels)
h5_to_xarray() (pysammos.data_write.h5.writer.H5XarrayManager method)
H5XarrayManager (class in pysammos.data_write.h5.writer)
hash_table_search() (in module pysammos.spatial_weights.hashtable_search)
hash_table_search_1d() (in module pysammos.spatial_weights.hashtable_search)
hash_table_search_2d() (in module pysammos.spatial_weights.hashtable_search)
heavySide() (in module pysammos.spatial_weights.kernels)
I
initialize() (in module pysammos.data_write.vtkhdf.core)
integration() (pysammos.post_averaging.profiles.VerticalIntegrator method)
integration_scalar() (in module pysammos.spatial_weights.utils)
is_tensor_data() (in module pysammos.data_write.vtkhdf.core)
is_vector_data() (in module pysammos.data_write.vtkhdf.core)
K
kinetic_tensor() (in module pysammos.macroscopic_fields.gridded.dispatcher)
kinetic_tensor_interpolation_monodisperse() (in module pysammos.macroscopic_fields.gridded.tensors)
kinetic_tensor_interpolation_polydisperse() (in module pysammos.macroscopic_fields.gridded.tensors)
L
lucy() (in module pysammos.spatial_weights.kernels)
M
make_hash_table() (in module pysammos.spatial_weights.hashtable_search)
map_contact_data() (in module pysammos.data_handle.contacts.particle_mapper)
mean_grainsize() (in module pysammos.macroscopic_fields.gridded.scalars)
module
pysammos.coarse_graining
pysammos.data_handle
pysammos.data_handle.contacts
pysammos.data_handle.contacts.complete
pysammos.data_handle.contacts.complete.branch_vectors
pysammos.data_handle.contacts.complete.coordination_number
pysammos.data_handle.contacts.particle_mapper
pysammos.data_handle.contacts.qualitycheck
pysammos.data_handle.contacts.qualitycheck.duplicates
pysammos.data_handle.particles
pysammos.data_handle.particles.particle_stats
pysammos.data_read
pysammos.data_read.mfix
pysammos.data_read.mfix.cell_data
pysammos.data_read.mfix.file_read
pysammos.data_read.mfix.point_data
pysammos.data_read.mfix.utils
pysammos.data_write
pysammos.data_write.h5
pysammos.data_write.h5.writer
pysammos.data_write.vtkhdf
pysammos.data_write.vtkhdf.core
pysammos.data_write.vtkhdf.writer
pysammos.grid_generation
pysammos.grid_generation.regular_cuboid
pysammos.macroscopic_fields
pysammos.macroscopic_fields.field_dependencies
pysammos.macroscopic_fields.gridded
pysammos.macroscopic_fields.gridded.dispatcher
pysammos.macroscopic_fields.gridded.scalars
pysammos.macroscopic_fields.gridded.secondary
pysammos.macroscopic_fields.gridded.tensors
pysammos.macroscopic_fields.gridded.vectors
pysammos.macroscopic_fields.sliced
pysammos.macroscopic_fields.sliced.granular_temperature
pysammos.macroscopic_fields.sliced.utils
pysammos.neighbour_search
pysammos.neighbour_search.grid_particle_search
pysammos.particle_phase
pysammos.particle_phase.clustering
pysammos.post_averaging
pysammos.post_averaging.profiles
pysammos.spatial_weights
pysammos.spatial_weights.hashtable_search
pysammos.spatial_weights.kernels
pysammos.spatial_weights.resolution
pysammos.spatial_weights.utils
P
particle_node_match() (in module pysammos.neighbour_search.grid_particle_search)
particles() (in module pysammos.data_read.mfix.point_data)
particles_band() (in module pysammos.macroscopic_fields.sliced.utils)
plot_phases() (in module pysammos.particle_phase.clustering)
point2cell_dimensions() (in module pysammos.data_write.vtkhdf.core)
point2cell_extent() (in module pysammos.data_write.vtkhdf.core)
pysammos.coarse_graining
module
pysammos.data_handle
module
pysammos.data_handle.contacts
module
pysammos.data_handle.contacts.complete
module
pysammos.data_handle.contacts.complete.branch_vectors
module
pysammos.data_handle.contacts.complete.coordination_number
module
pysammos.data_handle.contacts.particle_mapper
module
pysammos.data_handle.contacts.qualitycheck
module
pysammos.data_handle.contacts.qualitycheck.duplicates
module
pysammos.data_handle.particles
module
pysammos.data_handle.particles.particle_stats
module
pysammos.data_read
module
pysammos.data_read.mfix
module
pysammos.data_read.mfix.cell_data
module
pysammos.data_read.mfix.file_read
module
pysammos.data_read.mfix.point_data
module
pysammos.data_read.mfix.utils
module
pysammos.data_write
module
pysammos.data_write.h5
module
pysammos.data_write.h5.writer
module
pysammos.data_write.vtkhdf
module
pysammos.data_write.vtkhdf.core
module
pysammos.data_write.vtkhdf.writer
module
pysammos.grid_generation
module
pysammos.grid_generation.regular_cuboid
module
pysammos.macroscopic_fields
module
pysammos.macroscopic_fields.field_dependencies
module
pysammos.macroscopic_fields.gridded
module
pysammos.macroscopic_fields.gridded.dispatcher
module
pysammos.macroscopic_fields.gridded.scalars
module
pysammos.macroscopic_fields.gridded.secondary
module
pysammos.macroscopic_fields.gridded.tensors
module
pysammos.macroscopic_fields.gridded.vectors
module
pysammos.macroscopic_fields.sliced
module
pysammos.macroscopic_fields.sliced.granular_temperature
module
pysammos.macroscopic_fields.sliced.utils
module
pysammos.neighbour_search
module
pysammos.neighbour_search.grid_particle_search
module
pysammos.particle_phase
module
pysammos.particle_phase.clustering
module
pysammos.post_averaging
module
pysammos.post_averaging.profiles
module
pysammos.spatial_weights
module
pysammos.spatial_weights.hashtable_search
module
pysammos.spatial_weights.kernels
module
pysammos.spatial_weights.resolution
module
pysammos.spatial_weights.utils
module
R
read_slice() (in module pysammos.data_write.vtkhdf.core)
read_vtkhdf() (in module pysammos.data_write.vtkhdf.core)
reader() (in module pysammos.data_read.mfix.file_read)
Reader_vtm() (in module pysammos.data_read.mfix.point_data)
run() (pysammos.coarse_graining.CoarseGraining method)
S
scalar() (in module pysammos.macroscopic_fields.gridded.dispatcher)
scalar_monodisperse() (in module pysammos.macroscopic_fields.gridded.scalars)
scalar_monodisperse_scaled() (in module pysammos.macroscopic_fields.gridded.scalars)
scalar_polydisperse() (in module pysammos.macroscopic_fields.gridded.scalars)
scalar_polydisperse_scaled() (in module pysammos.macroscopic_fields.gridded.scalars)
scalar_x_volume() (in module pysammos.macroscopic_fields.gridded.scalars)
set_point_4d_tensor() (in module pysammos.data_write.vtkhdf.core)
set_point_scalar() (in module pysammos.data_write.vtkhdf.core)
set_point_symmetric_tensor() (in module pysammos.data_write.vtkhdf.core)
set_point_tensor() (in module pysammos.data_write.vtkhdf.core)
set_point_vector() (in module pysammos.data_write.vtkhdf.core)
set_resolution() (pysammos.coarse_graining.CoarseGraining method)
sweep_CG_widths() (pysammos.coarse_graining.CoarseGraining method)
T
tensor() (in module pysammos.macroscopic_fields.gridded.dispatcher)
tensor_monodisperse() (in module pysammos.macroscopic_fields.gridded.tensors)
tensor_monodisperse_scaled() (in module pysammos.macroscopic_fields.gridded.tensors)
tensor_polydisperse() (in module pysammos.macroscopic_fields.gridded.tensors)
tensor_polydisperse_scaled() (in module pysammos.macroscopic_fields.gridded.tensors)
trapezoidal_integration() (in module pysammos.spatial_weights.utils)
U
update_h5py_file() (pysammos.data_write.h5.writer.H5XarrayManager method)
V
validate_imagedata_consistency() (in module pysammos.data_write.vtkhdf.core)
vector() (in module pysammos.macroscopic_fields.gridded.dispatcher)
vector_monodisperse() (in module pysammos.macroscopic_fields.gridded.vectors)
vector_monodisperse_scaled() (in module pysammos.macroscopic_fields.gridded.vectors)
vector_polydisperse() (in module pysammos.macroscopic_fields.gridded.vectors)
vector_polydisperse_scaled() (in module pysammos.macroscopic_fields.gridded.vectors)
VerticalIntegrator (class in pysammos.post_averaging.profiles)
VTKHDFWriter (class in pysammos.data_write.vtkhdf.writer)
W
Wm() (in module pysammos.macroscopic_fields.sliced.utils)
write() (pysammos.data_write.vtkhdf.writer.VTKHDFWriter method)
write_multicomponent_slice() (in module pysammos.data_write.vtkhdf.core)
write_polydisperse() (pysammos.data_write.vtkhdf.writer.VTKHDFWriter method)
write_scalar_slice() (in module pysammos.data_write.vtkhdf.core)
write_vector_slice() (in module pysammos.data_write.vtkhdf.core)
write_vtkhdf() (in module pysammos.data_write.vtkhdf.core)