Index

A

add_phases() (pysammos.data_write.h5.writer.H5XarrayManager method) add_positions() (pysammos.data_write.h5.writer.H5XarrayManager method)

area() (in module pysammos.macroscopic_fields.sliced.utils) Automatic_Range() (pysammos.grid_generation.regular_cuboid.Grid_Generation method)

B

bulk_fabric_tensor_Sun2015() (in module pysammos.macroscopic_fields.gridded.secondary)

C

c2f_reshape() (in module pysammos.data_write.vtkhdf.core) calc_cutoff() (in module pysammos.spatial_weights.resolution) calc_displacement() (in module pysammos.neighbour_search.grid_particle_search) calc_half_width() (in module pysammos.spatial_weights.resolution) calc_slices() (in module pysammos.macroscopic_fields.sliced.granular_temperature) CoarseGraining (class in pysammos.coarse_graining) compute_deviatoric_tensor() (in module pysammos.macroscopic_fields.gridded.secondary) compute_dist_along_branch() (in module pysammos.spatial_weights.utils) compute_granular_temperature() (in module pysammos.macroscopic_fields.gridded.secondary) compute_inertial_number() (in module pysammos.macroscopic_fields.gridded.secondary) compute_pressure() (in module pysammos.macroscopic_fields.gridded.secondary) compute_second_invariant() (in module pysammos.macroscopic_fields.gridded.secondary)

compute_shear_rate_tensor() (in module pysammos.macroscopic_fields.gridded.secondary) compute_vector_bulk_gradient() (in module pysammos.macroscopic_fields.gridded.secondary) compute_velgrad_leastsquares() (in module pysammos.macroscopic_fields.gridded.secondary) ContactData__JP() (in module pysammos.data_read.mfix.point_data) contacts() (in module pysammos.data_read.mfix.cell_data) (in module pysammos.data_read.mfix.point_data) count() (in module pysammos.data_handle.contacts.complete.coordination_number) create_adaptive_chunks() (in module pysammos.data_write.vtkhdf.core) create_cell_dataset() (in module pysammos.data_write.vtkhdf.core) create_field_dataset() (in module pysammos.data_write.vtkhdf.core) Create_grid_points() (pysammos.grid_generation.regular_cuboid.Grid_Generation static method) create_point_dataset() (in module pysammos.data_write.vtkhdf.core)

D

d50_calc() (in module pysammos.data_handle.particles.particle_stats) data_sampling() (pysammos.coarse_graining.CoarseGraining method)

delete() (in module pysammos.data_handle.contacts.qualitycheck.duplicates) dimensions2extent() (in module pysammos.data_write.vtkhdf.core)

E

extent2dimensions() (in module pysammos.data_write.vtkhdf.core)

extract_all_polydata() (in module pysammos.data_read.mfix.point_data)

F

f2c_reshape() (in module pysammos.data_write.vtkhdf.core) fields_in_time() (pysammos.coarse_graining.CoarseGraining method) find_phases() (in module pysammos.particle_phase.clustering)

first_significant_figure_position() (in module pysammos.spatial_weights.utils) from_contacts() (in module pysammos.data_handle.contacts.complete.branch_vectors) from_diameters() (in module pysammos.data_handle.contacts.complete.branch_vectors)

G

gaussian() (in module pysammos.spatial_weights.kernels) Generate() (pysammos.grid_generation.regular_cuboid.Grid_Generation method) generate_grid() (pysammos.coarse_graining.CoarseGraining method) get_area_factor() (pysammos.post_averaging.profiles.VerticalIntegrator method) get_bounds() (in module pysammos.data_read.mfix.utils) get_cell_array() (in module pysammos.data_write.vtkhdf.core) get_cell_data_shape() (in module pysammos.data_write.vtkhdf.core) get_cell_dataset() (in module pysammos.data_write.vtkhdf.core) get_data_order() (in module pysammos.data_write.vtkhdf.core) get_field_array() (in module pysammos.data_write.vtkhdf.core) get_field_dataset() (in module pysammos.data_write.vtkhdf.core) get_fields_to_compute() (in module pysammos.macroscopic_fields.field_dependencies)

get_file_type() (in module pysammos.data_read.mfix.file_read) get_particle_phases() (pysammos.coarse_graining.CoarseGraining method) get_particle_size_statistics() (pysammos.coarse_graining.CoarseGraining method) get_point_array() (in module pysammos.data_write.vtkhdf.core) get_point_data_shape() (in module pysammos.data_write.vtkhdf.core) get_point_data_variable() (in module pysammos.data_read.mfix.utils) get_point_dataset() (in module pysammos.data_write.vtkhdf.core) get_point_tensor() (in module pysammos.data_write.vtkhdf.core) get_point_vector() (in module pysammos.data_write.vtkhdf.core) get_position_data() (pysammos.post_averaging.profiles.VerticalIntegrator method) get_unique_pairs() (in module pysammos.data_handle.contacts.qualitycheck.duplicates) granular_temperature() (in module pysammos.macroscopic_fields.sliced.granular_temperature) Grid_Generation (class in pysammos.grid_generation.regular_cuboid)

H

h() (in module pysammos.spatial_weights.kernels) h5_to_xarray() (pysammos.data_write.h5.writer.H5XarrayManager method) H5XarrayManager (class in pysammos.data_write.h5.writer)

hash_table_search() (in module pysammos.spatial_weights.hashtable_search) hash_table_search_1d() (in module pysammos.spatial_weights.hashtable_search) hash_table_search_2d() (in module pysammos.spatial_weights.hashtable_search) heavySide() (in module pysammos.spatial_weights.kernels)

I

initialize() (in module pysammos.data_write.vtkhdf.core) integration() (pysammos.post_averaging.profiles.VerticalIntegrator method)

integration_scalar() (in module pysammos.spatial_weights.utils) is_tensor_data() (in module pysammos.data_write.vtkhdf.core) is_vector_data() (in module pysammos.data_write.vtkhdf.core)

K

kinetic_tensor() (in module pysammos.macroscopic_fields.gridded.dispatcher)

kinetic_tensor_interpolation_monodisperse() (in module pysammos.macroscopic_fields.gridded.tensors) kinetic_tensor_interpolation_polydisperse() (in module pysammos.macroscopic_fields.gridded.tensors)

L

lucy() (in module pysammos.spatial_weights.kernels)

M

make_hash_table() (in module pysammos.spatial_weights.hashtable_search) map_contact_data() (in module pysammos.data_handle.contacts.particle_mapper) mean_grainsize() (in module pysammos.macroscopic_fields.gridded.scalars) module pysammos.coarse_graining pysammos.data_handle pysammos.data_handle.contacts pysammos.data_handle.contacts.complete pysammos.data_handle.contacts.complete.branch_vectors pysammos.data_handle.contacts.complete.coordination_number pysammos.data_handle.contacts.particle_mapper pysammos.data_handle.contacts.qualitycheck pysammos.data_handle.contacts.qualitycheck.duplicates pysammos.data_handle.particles pysammos.data_handle.particles.particle_stats pysammos.data_read pysammos.data_read.mfix pysammos.data_read.mfix.cell_data pysammos.data_read.mfix.file_read pysammos.data_read.mfix.point_data pysammos.data_read.mfix.utils pysammos.data_write pysammos.data_write.h5 pysammos.data_write.h5.writer pysammos.data_write.vtkhdf pysammos.data_write.vtkhdf.core pysammos.data_write.vtkhdf.writer pysammos.grid_generation pysammos.grid_generation.regular_cuboid pysammos.macroscopic_fields pysammos.macroscopic_fields.field_dependencies pysammos.macroscopic_fields.gridded pysammos.macroscopic_fields.gridded.dispatcher pysammos.macroscopic_fields.gridded.scalars pysammos.macroscopic_fields.gridded.secondary pysammos.macroscopic_fields.gridded.tensors pysammos.macroscopic_fields.gridded.vectors pysammos.macroscopic_fields.sliced pysammos.macroscopic_fields.sliced.granular_temperature pysammos.macroscopic_fields.sliced.utils pysammos.neighbour_search pysammos.neighbour_search.grid_particle_search pysammos.particle_phase pysammos.particle_phase.clustering pysammos.post_averaging pysammos.post_averaging.profiles pysammos.spatial_weights pysammos.spatial_weights.hashtable_search pysammos.spatial_weights.kernels pysammos.spatial_weights.resolution pysammos.spatial_weights.utils

P

particle_node_match() (in module pysammos.neighbour_search.grid_particle_search) particles() (in module pysammos.data_read.mfix.point_data) particles_band() (in module pysammos.macroscopic_fields.sliced.utils) plot_phases() (in module pysammos.particle_phase.clustering) point2cell_dimensions() (in module pysammos.data_write.vtkhdf.core) point2cell_extent() (in module pysammos.data_write.vtkhdf.core) pysammos.coarse_graining module pysammos.data_handle module pysammos.data_handle.contacts module pysammos.data_handle.contacts.complete module pysammos.data_handle.contacts.complete.branch_vectors module pysammos.data_handle.contacts.complete.coordination_number module pysammos.data_handle.contacts.particle_mapper module pysammos.data_handle.contacts.qualitycheck module pysammos.data_handle.contacts.qualitycheck.duplicates module pysammos.data_handle.particles module pysammos.data_handle.particles.particle_stats module pysammos.data_read module pysammos.data_read.mfix module pysammos.data_read.mfix.cell_data module pysammos.data_read.mfix.file_read module pysammos.data_read.mfix.point_data module pysammos.data_read.mfix.utils module pysammos.data_write module pysammos.data_write.h5 module pysammos.data_write.h5.writer module pysammos.data_write.vtkhdf module pysammos.data_write.vtkhdf.core module

pysammos.data_write.vtkhdf.writer module pysammos.grid_generation module pysammos.grid_generation.regular_cuboid module pysammos.macroscopic_fields module pysammos.macroscopic_fields.field_dependencies module pysammos.macroscopic_fields.gridded module pysammos.macroscopic_fields.gridded.dispatcher module pysammos.macroscopic_fields.gridded.scalars module pysammos.macroscopic_fields.gridded.secondary module pysammos.macroscopic_fields.gridded.tensors module pysammos.macroscopic_fields.gridded.vectors module pysammos.macroscopic_fields.sliced module pysammos.macroscopic_fields.sliced.granular_temperature module pysammos.macroscopic_fields.sliced.utils module pysammos.neighbour_search module pysammos.neighbour_search.grid_particle_search module pysammos.particle_phase module pysammos.particle_phase.clustering module pysammos.post_averaging module pysammos.post_averaging.profiles module pysammos.spatial_weights module pysammos.spatial_weights.hashtable_search module pysammos.spatial_weights.kernels module pysammos.spatial_weights.resolution module pysammos.spatial_weights.utils module

R

read_slice() (in module pysammos.data_write.vtkhdf.core) read_vtkhdf() (in module pysammos.data_write.vtkhdf.core)

reader() (in module pysammos.data_read.mfix.file_read) Reader_vtm() (in module pysammos.data_read.mfix.point_data) run() (pysammos.coarse_graining.CoarseGraining method)

S

scalar() (in module pysammos.macroscopic_fields.gridded.dispatcher) scalar_monodisperse() (in module pysammos.macroscopic_fields.gridded.scalars) scalar_monodisperse_scaled() (in module pysammos.macroscopic_fields.gridded.scalars) scalar_polydisperse() (in module pysammos.macroscopic_fields.gridded.scalars) scalar_polydisperse_scaled() (in module pysammos.macroscopic_fields.gridded.scalars) scalar_x_volume() (in module pysammos.macroscopic_fields.gridded.scalars)

set_point_4d_tensor() (in module pysammos.data_write.vtkhdf.core) set_point_scalar() (in module pysammos.data_write.vtkhdf.core) set_point_symmetric_tensor() (in module pysammos.data_write.vtkhdf.core) set_point_tensor() (in module pysammos.data_write.vtkhdf.core) set_point_vector() (in module pysammos.data_write.vtkhdf.core) set_resolution() (pysammos.coarse_graining.CoarseGraining method) sweep_CG_widths() (pysammos.coarse_graining.CoarseGraining method)

T

tensor() (in module pysammos.macroscopic_fields.gridded.dispatcher) tensor_monodisperse() (in module pysammos.macroscopic_fields.gridded.tensors) tensor_monodisperse_scaled() (in module pysammos.macroscopic_fields.gridded.tensors)

tensor_polydisperse() (in module pysammos.macroscopic_fields.gridded.tensors) tensor_polydisperse_scaled() (in module pysammos.macroscopic_fields.gridded.tensors) trapezoidal_integration() (in module pysammos.spatial_weights.utils)

U

update_h5py_file() (pysammos.data_write.h5.writer.H5XarrayManager method)

V

validate_imagedata_consistency() (in module pysammos.data_write.vtkhdf.core) vector() (in module pysammos.macroscopic_fields.gridded.dispatcher) vector_monodisperse() (in module pysammos.macroscopic_fields.gridded.vectors) vector_monodisperse_scaled() (in module pysammos.macroscopic_fields.gridded.vectors)

vector_polydisperse() (in module pysammos.macroscopic_fields.gridded.vectors) vector_polydisperse_scaled() (in module pysammos.macroscopic_fields.gridded.vectors) VerticalIntegrator (class in pysammos.post_averaging.profiles) VTKHDFWriter (class in pysammos.data_write.vtkhdf.writer)

W

Wm() (in module pysammos.macroscopic_fields.sliced.utils) write() (pysammos.data_write.vtkhdf.writer.VTKHDFWriter method) write_multicomponent_slice() (in module pysammos.data_write.vtkhdf.core)

write_polydisperse() (pysammos.data_write.vtkhdf.writer.VTKHDFWriter method) write_scalar_slice() (in module pysammos.data_write.vtkhdf.core) write_vector_slice() (in module pysammos.data_write.vtkhdf.core) write_vtkhdf() (in module pysammos.data_write.vtkhdf.core)